T-COFFEE, Version_9.03.r1542 (2013-04-15 14:45:23 - Revision 1542 - Build 408)
Cedric Notredame
CPU TIME:0 sec.
SCORE=77
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BAD AVG GOOD
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human : 79
chimpanzee : 79
mouse : 78
rat : 79
Syrian_hamster : 80
bank_vole : 81
mule_deer : 79
elk : 78
cow : 75
opossum : 77
sheep : 78
goat : 78
dog : 78
wild : 79
rabbit : 79
platypus : 73
sperm_whale : 78
dolphin : 78
chicken : 67
xenopus : 66
zebrafish_PrP1 : 56
zebrafish_PrP2 : 46
human_Shadoo : 48
human_Doppel : 58
cons : 77
human 1 MA----NLGCWM-L-VLFVATWSD--LGLCKK-----RPKP-G-GW--NTG-GSRYPGQG-SPGGN 47
chimpanzee 1 MA----NLGCWM-L-VLFVATWSD--LGLCKK-----RPKP-G-GW--NTG-GSRYPGQG-SPGGN 47
mouse 1 MA----NLGYWL-L-ALFVTMWTD--VGLCKK-----RPKP-G-GW--NTG-GSRYPGQG-SPGGN 47
rat 1 MA----NLGYWL-L-ALFVTTCTD--VGLCKK-----RPKP-G-GW--NTG-GSRYPGQG-SPGGN 47
Syrian_hamster 1 ---------------ALFVAMWTD--VGLCKK-----RPKP-G-GW--NTG-GSRYPGQG-SPGGN 38
bank_vole 1 ------------------------------KK-----RPKP-G-GN--NTG-GSRYPGQG-SPGGN 25
mule_deer 1 MVKS--HIGSWI-L-VLFVAMWSX--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
elk 1 MVKS--HIGSWI-L-VLFVAMWSD--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
cow 1 MVKS--HIGSWI-L-VLFVAMWSD--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
opossum 1 MGKI--HLGYWF-L-ALFIMTWSD--LTLCKKP----KPRP-GGGW--NSG-GNRYPGQS---GGW 49
sheep 1 MVKS--HIGSWI-L-VLFVAMWSD--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
goat 1 MVKS--HIGSWI-L-VLFVAMWSD--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
dog 1 MVKS--HIGGWI-L-LLFVATWSD--VGLCKK-----RPKP-G-GW--NTGGGSRYPGQG-SPGGN 50
wild 1 MVKS--HIGGWI-L-VLFVAAWSD--IGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
rabbit 1 MA----HLGYWM-L-LLFVATWSD--VGLCKK-----RPKP-GGGW--NTG-GSRYPGQS-SPGGN 48
platypus 1 ---------HWI-I-DICVVHLERRCRGHLHP-----NPCP-G-GRCVQQQ-PNRYPGQPATPGGW 47
sperm_whale 1 MVKS--HIANWI-L-VLFVATWSD--MGLCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
dolphin 1 MVKS--HIANWI-L-VLFVATWSD--MGFCKK-----RPKP-GGGW--NTG-GSRYPGQG-SPGGN 50
chicken 1 MARL--LTTCCL-L-ALLLAACTD--VALSKKG----KGKPSGGGW--GAG-SHRQPSYP-RQPGY 52
xenopus 1 MPQS--L---WT-C-LVLISLVCT--LTVSSKKSGGGKSKT-G-GW--NTG-SNRNPN---YPGG- 48
zebrafish_PrP1 1 MLGHQNLLIIWV-W-MLLLASLCP--CFHCKR-----G-FG-GRGM--SKG-AA--P--------- 41
zebrafish_PrP2 1 MHSK-FKLFSFLNC-LLLLAVLLP--VAQSRR----------GGGF--GRG-GGRGG--------- 40
human_Shadoo 1 MNWA--PATCWA-L-LLAAAFLCD--SGAAKG-----GRGG-ARGS--ARG-GVRGG--------- 42
human_Doppel 1 MRK---HLSWWW-LATVCMLLFSH--LSAVQT-----R---------------------------- 27
cons 1 66
human 48 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWGQ---- 91
chimpanzee 48 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWGQ---- 91
mouse 48 RYPPQG-GTWGQPHGGG--WGQPHGG--S--WGQPHGG--SW--------GQPHG-G-GWGQ---- 90
rat 48 RYPPQSGGTWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWSQ---- 91
Syrian_hamster 39 RYPPQGGGTWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWGQ---- 82
bank_vole 26 RYPPQGGGTWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWGQ---- 69
mule_deer 51 RYPPQGGGGWGQPHXGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
elk 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
cow 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GWGQPHGGGWGQPHGGG-GWGQ---- 103
opossum 50 GHPQGGGTNWGQPHAGGSNWGQPRPGGSN--WGQPHPGGSNW--------GQPHPGGSNWGQ---- 101
sheep 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
goat 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
dog 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
wild 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
rabbit 49 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHG-G-GWGQ---- 92
platypus 48 GHPQGGGASWGHPQGGGASWGHPQGG--GSNWGHPQGGGASW--------GHPQG-G-GY------ 95
sperm_whale 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
dolphin 51 RYPPQGGGGWGQPHGGG--WGQPHGG--G--WGQPHGG--GW--------GQPHGGG-GWGQ---- 95
chicken 53 PHNPGYPHNPGYPHNPG----YPHNP--G--YPQ--NP--GY--------PHNPGYP-GWGQGYNP 97
xenopus 49 -YPGNTGGSWGQQ---------------------------------------PYN----------- 63
zebrafish_PrP1 42 ----------------------------A--K---------A--------PP-------------- 46
zebrafish_PrP2 41 --------GWGGSSSGR--------A--G--WGAAGGH--HR--------APPVHTG-HMGH---- 71
human_Shadoo 43 ----------------------------A--RGASRVR---V--------RP-------------- 53
human_Doppel 28 ------------------------------------------------------------------ 27
cons 67 132
human 92 --GGGTHSQWNKPSK-PKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGS--D-YEDRYYR 151
chimpanzee 92 --GGGTHSQWNKPSK-PKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGS--D-YEDRYYR 151
mouse 91 --GGGTHNQWNKPSK-PKTNLKHVAGAAAAGAVVGGLGGYMLGSAMSRPMIHFGN--D-WEDRYYR 150
rat 92 --GGGTHNQWNKPSK-PKTNLKHVAGAAAAGAVVGGLGGYMLGSAMSRPMLHFGN--D-WEDRYYR 151
Syrian_hamster 83 --GGGTHNQWNKPSK-PKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPMMHFGN--D-WEDRYYR 142
bank_vole 70 --GGGTHNQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPMIHFGN--D-WEDRYYR 129
mule_deer 96 --X-GTHSQWNKPSK-PKTNMKHVXGAAAAGAVVGGLGGYMLGSAMXRPLIHFGN--D-YEDXYYR 154
elk 96 --G-GTHSQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGN--D-YEDRYYR 154
cow 104 --G-GTHGQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGS--D-YEDRYYR 162
opossum 102 --AGSSYNQKWKPDK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPIMHFGS--D-YEDRYYR 161
sheep 96 --G-GSHSQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGN--D-YEDRYYR 154
goat 96 --G-GSHSQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIRFGN--D-YEDRYYR 154
dog 96 --GGGSHSQWGKPNK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGN--D-YEDRYYR 155
wild 96 --GGGSHGQWNKPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGS--D-YEDRYYR 155
rabbit 93 --GGGTHNQWGKPSK-PKTSMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGN--D-YEDRYYR 152
platypus 96 -------SK-YKPDK-PKTGMKHVAGAAAAGAVVGGLGGYMIGSAMSRPPMHFGN--E-FEDRYYR 149
sperm_whale 96 PHGGGTHNQW-KPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGS--D-YEDRYYR 156
dolphin 96 --GGGTHNQW-KPSK-PKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGS--D-YEDRYYR 154
chicken 98 SSGGSYHNQ--KPWKPPKTNFKHVAGAAAAGAVVGGLGGYAMGRVMSGMNYHFDR--P-DEYRWWS 158
xenopus 64 --PSGYNKQW-KPPK-SKTNMKSVAIGAAAGA----IGGYMLGNAVGRMSYQFNN--P-MESRYYN 118
zebrafish_PrP1 47 -------SQ-SKGSS-SRQGLK-LAGAAAAGAIGGAAIGYGLGS-LGRPRYG-HN--G-YSDGYHQ 97
zebrafish_PrP2 72 --IGHTGHT-GHTGS-SGHGVGKVAGAAAAGALGGMLVGHGLSS-MGRPGYGYGY--GGYGGHGYG 130
human_Shadoo 54 -------AQ--RYGA-PGSSLRVAAAGAAAGAAAGAAAGLAAGSGWRRAAGPGERGLEDEEDGVPG 109
human_Doppel 28 --GIKHRIKWNRKAL-PSTAQITEAQVA--EN----RPGAFIKQ-GRKLDIDFGA--E--GNRYYE 79
cons 133 : . * * 198
human 152 ENMHRYPNQVYYRPM---DEYS-NQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 199
chimpanzee 152 ENMHRYPNQVYYRPM---DQYS-SQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 199
mouse 151 ENMYRYPNQVYYRPV---DQYS-NQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 198
rat 152 ENMYRYPNQVYYRPV---DQYS-NQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 199
Syrian_hamster 143 ENMNRYPNQVYYRPV---DQYN-NQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 190
bank_vole 130 ENMNRYPNQVYYRPV---DQYN-NQNNFVHDCVNITIKQHTVTT-TTKG--------EN---F--T 177
mule_deer 155 ENMYRYPNQVYYRPV---DQYN-NQNTFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 202
elk 155 ENMYRYPNQVYYRPV---DQYN-NQNTFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 202
cow 163 ENMHRYPNQVYYRPV---DQYS-NQNNFVHDCVNITVKEHTVTT-TTKG--------EN---F--T 210
opossum 162 ENQYRYPNQVMYRPI---DQYN-NQNNFVHDCVNITVKQHTTTT-TTKG--------EN---F--T 209
sheep 155 ENMYRYPNQVYYRPV---DQYS-NQNNFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 202
goat 155 ENMYRYPNQVYYRPV---DQYS-NQNNFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 202
dog 156 ENMYRYPEQVYYRPV---DQYS-NQNNFVRDCVNITVKQHTVTT-TTKG--------EN---F--T 203
wild 156 ENMYRYPNQVYYRPV---DQYS-NQNSFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 203
rabbit 153 ENMYRYPNQVYYRPV---DQYS-NQNSFVHDCVNITVKQHTVTT-TTKG--------EN---F--T 200
platypus 150 ENQNRYPNQVYYRPV---DQYG-SQDGFVRDCVNITVTQHTVTT--TEG--------KN---L--N 196
sperm_whale 157 ENMYRYPNQVYYRPV---DQYN-NQNSFVHDCVNITVKQHTVTTTTTKG--------EN---F--T 205
dolphin 155 ENMYRYPNQVYYRPV---DQYN-NQNSFVHDCVNITVKQHTVTTTTTKG--------EN---F--T 203
chicken 159 ENSARYPNRVYYRDY---SSPV-PQDVFVADCFNITVTEYSIGP-AAKKNTSEAVAAAN---QTEV 216
xenopus 119 DYYNQMPNRVY-RPMYRGEEYV-SEDRFVRDCYNMSVTEYIIKP--AEG--------KNNSEL--N 170
zebrafish_PrP1 98 P-VYNQS----------------------------------------------------------- 103
zebrafish_PrP2 131 Y-GHGYGHGHGH----------------------------GGHG-GHSG---------D---H--N 152
human_Shadoo 110 G-NGTGP----------------------------------------------------------- 115
human_Doppel 80 ANYWQFPDGIHYNGC---SEANVTKEAFVTGCINATQAAN-------QG---------E---F--Q 121
cons 199 264
human 200 ETDVK----MMERVVEQMCITQYERESQAYYQ--R--GSSMVLFSSP--PVI-LLI---SFLIFLI 251
chimpanzee 200 ETDVK----MMERVVEQMCITQYERESQAYYQ--R--GSSMVLFSSP--PVI-LLI---SFLIFLI 251
mouse 199 ETDVK----MMERVVEQMCVTQYQKESQAYYDGRR--SSSTVLFSSP--PVI-LLI---SFLIFLI 252
rat 200 ETDVK----MMERVVEQMCVTQYQKESQAYYD-GR--RSSAVLFSSP--PVI-LLI---SFLIFLI 252
Syrian_hamster 191 ETDIK----IMERVVEQMCTTQYQKESQAYYD-GR--RSSAVLFSSP--PVI-LLI---SFLIFLI 243
bank_vole 178 ETDVK----MMERVVEQMCVTQYQKESQAYYE--G--RS--------------------------- 208
mule_deer 203 ETDIK----MMERVVEQMCITQYQRESQAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 254
elk 203 ETDIK----MMERVVEQMCITQYQRESEAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 254
cow 211 ETDIK----MMERVVEQMCITQYQRESQAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 262
opossum 210 ETDIK----IMERVVEQMCITQYQNEYRSAY--------SVAFFSAP--PVTLLLL---SFLIFLI 258
sheep 203 ETDIK----IMERVVEQMCITQYQRESQAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 254
goat 203 ETDIK----IMERVVEQMCITQYQRESQAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 254
dog 204 ETDMK----IMERVVEQMCVTQYQKESEAYYQ--R--GASAILFSPP--PVI-LLI---SLLILLI 255
wild 204 ETDVK----MIERVVEQMCITQYQKEYEAYAQ--R--GASVILFSSP--PVI-LLI---SFLLFLI 255
rabbit 201 ETDIK----IMERVVEQMCITQYQQESQAAYQ--R--AAGVLLFSSP--PVI-LLI---SFLIFLI 252
platypus 197 ETDVK----IMTRVLEQMCVNL-------------------------------------------- 214
sperm_whale 206 ETDIK----MMERVVEQMCITQYQREYQAYYQ--R--GASVILFSSP--PVT-LLI---------- 250
dolphin 204 ETDIK----MMERVVEQMCITQYQREYEAYYQ--R--GASVILFSSP--PVI-LLI---SFLIFLI 255
chicken 217 EMENK----VVTKVIREMCVQQYREY-----R--L--ASGIQLHPADTWLAV-LLL---LLTTLFA 265
xenopus 171 QLDTT----VKSQIIREMCITEYR----------R--GSGFKVLSNP--WLI-LTI---TLFVYFV 214
zebrafish_PrP1 104 --------------------------HRGYYG-ST--GSS-EHMGSL--LI-TLGT---VAHVVIM 133
zebrafish_PrP2 153 ET------------------------DADYYL-DG--AASGHAYSCV--TVFGLMM---SFLIGHF 186
human_Shadoo 116 --------------------------GIYSYR-AWTSGAG--PTRGP--RL-CLVLGGALGALGLL 149
human_Doppel 122 KPDNKLHQQVLWRLVQELCSLKH---CEFWLE--R--GAGLRVTMHQ--PVL-LCL---LALIWLM 174
cons 265 330
human 252 V--------GZ 254
chimpanzee 252 V---------G 253
mouse 253 V--------GZ 255
rat 253 V--------GZ 255
Syrian_hamster 244 V---------G 245
bank_vole 209 ----------S 209
mule_deer 255 V---------G 256
elk 255 V---------G 256
cow 263 V---------G 264
opossum 259 IPDAHSVEAIS 269
sheep 255 V---------G 256
goat 255 V---------G 256
dog 256 V---------G 257
wild 256 V---------G 257
rabbit 253 V---------G 254
platypus 215 ----------Y 215
sperm_whale 251 ----------S 251
dolphin 256 V---------G 257
chicken 266 M---------H 267
xenopus 215 I---------E 216
zebrafish_PrP1 134 W---------A 135
zebrafish_PrP2 187 L---------S 188
human_Shadoo 150 R---------P 151
human_Doppel 175 V---------K 176
cons 331 341