T-COFFEE, Version_9.03.r1542 (2013-04-15 14:45:23 - Revision 1542 - Build 408)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=52
*
 BAD AVG GOOD
*
human            :  53
chicken          :  51
xenopus          :  50
zebrafish_PrP1   :  50
zebrafish_PrP2   :  48
cons             :  52

human                1 MAN----LGCWMLVLFVATWSDLGL-CKK----R----PKPGGWNTGGSRYPGQGSPG--GN----   47 
chicken              1 MARL--LTTCCLLALLLAACTDVAL-SKK-GKGK----PSGGGWGAGSHRQPSY--PRQPG-----   51 
xenopus              1 MPQS--LWTCLVL---ISLVCTLTVSSKKSGGGK----SKTGGWNTGSNRNPNY--PG--G-----   48 
zebrafish_PrP1       1 MLGHQNLLIIWVWMLLLASLCPCFH-CKR-GFG-GRGMSKGAA----PA--------------KAP   45 
zebrafish_PrP2       1 MHSKFKLFSFLNCLLLLAVLLPVAQ-SRR-GGGFGRGGGRGGGWGGSSSGRAGWGAAG--GHHRAP   62 

cons                 1 *               ::        .::            ..                          66 


human               48 ----RYPPQGG--GGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQG------GGTH--SQW   99 
chicken             52 -----YPHNPGYPHNPGYPHNPGY--PHNPGYPQNPG-YPHNPGYPGWGQGYNPSSGGSYHNQKPW  109 
xenopus             49 -----YPGNTG--GSWGQ-----------------------QPYN-----P------SGYN--KQW   71 
zebrafish_PrP1      46 PSQ--------------------------------------------------------------S   49 
zebrafish_PrP2      63 PVHTGHMGHIG------------H---------------------TG----------------HTG   79 

cons                67                                                                     132 


human              100 NKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSD-YEDRYYRENMHRYPNQVYYR  164 
chicken            110 -KP--PKTNFKHVAGAAAAGAVVGGLGGYAMGRVMSGMNYHFDRP-DEYRWWSENSARYPNRVYYR  171 
xenopus             72 -KPPKSKTNMKSVAIGAAAGAI----GGYMLGNAVGRMSYQFNNP-MESRYYNDYYNQMPNRVYRP  131 
zebrafish_PrP1      50 -KGSSSRQGL-KLAGAAAAGAIGGAAIGYGLGS-LGRPRYGHN-G-YSD--------GY-------   95 
zebrafish_PrP2      80 -HTGSSGHGVGKVAGAAAAGALGGMLVGHGLSS-MGRPGYGYGYGGYGG-HGYGYGHGYGHGHGHG  142 

cons               133  :   .  ..  :* .*****:     *: :.  :.     ..                         198 


human              165 PM--DEYSNQNNFVHDCVNITIKQHTVTTTTKGENF-----------TETDVKMMERVVEQMCITQ  217 
chicken            172 DY--SSPVPQDVFVADCFNITVTEYSIGPAAK-KNTSEAVAAANQTEVEMENKVVTKVIREMCVQQ  234 
xenopus            132 MYRGEEYVSEDRFVRDCYNMSVTEYIIKPAEG-KNNSEL--------NQLDTTVKSQIIREMCITE  188 
zebrafish_PrP1      96 ------HQ------P-VYNQS---------------------------------------------  103 
zebrafish_PrP2     143 GH--GGHS------G-DHNET---------------------------------------------  154 

cons               199                   * :                                               264 


human              218 YERESQAYYQRGSSMVLF-SS--PPVILLISFLIFLIVGZ  254 
chicken            235 Y----REY-RLASGIQLHPAD--TWLAVLLLLLTTLFAMH  267 
xenopus            189 Y--------RRGSGFKVL-SN--PWLILTITLFVY-FVIE  216 
zebrafish_PrP1     104 H----RGY-YGSTGSSEHMGSL---LITLGTVAHVVIMWA  135 
zebrafish_PrP2     155 D----ADY-YLDGAASGHAYSCVTVFGLMMSF-LIGHFLS  188 

cons               265              .      .    .     .          304